Genetic Analysis Services

 
DxS offer a range of genetic analysis services to enable the delivery of safe effective medicines. The services provide support for drug development and are specifically designed to meet the needs of pharmaceutical companies and clinical research organisations. There is an increasing demand from the industry for genetic analysis of clinical trial populations to help understand the individual variation in drug pharmacokinetics and pharmacodynamics.

The genetic analysis services offered by DxS fall into three general categories:

Clinical Genotyping
bulletTumour Mutation Analysis
bulletDNA Extraction

 

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Clinical Genotyping

Assays are available as part of pre-developed panels:

Drug Metabolism genes
An extensive range of pre-developed validated tests are available to help companies better understand the metabolism, efficacy and safety of new medicines. These tests include cytochrome P450 genes, UGT and others.

Drug specific target genes
Assays to detect a known gene variant that will predict a patient’s response to a specific drug. For example assays for ApoE and MCIR.

Custom develop assays
We can provide custom developed tests for your drug or genetic variant of interest. We offer a design, validate and test service, in which any genetic assay will be developed for a customer, validated in line with regulatory guidelines on known samples and applied to the samples from the clinical trial. Expert advice is available if you are unsure which SNPs are of significant importance for your drug.

The Value of Genotyping in Clinical Development
Measuring the genetic variation within a clinical trial population can improve the design and increase the value of the trial by:

Pre-selecting patients most likely to benefit from the proposed therapy

Reducing the size of the clinical trial by using a defined population with an improved chance of a good response

Understanding the results of the trial in terms of the individual differences of the trial population


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Tumour Mutation Analysis

In the field of cancer, genetic mutations in the tumour can predict a response to oncology drugs. Tumour mutation analysis is technically challenging because of the heterogeneity of the sample. In practice this means that tumour mutation tests must be able to detect mutations even when the majority of the sample is not mutated.
DxS has an oncology test panel that uses ARMS technology, which allows for very sensitive tests that can detect mutations in background of normal cells. Mutations can be detected at a ratio of 1:100 mutant:normal DNA and this allows DxS to detect genetic variation that could not be seen using DNA sequencing methods. This is very valuable in an oncology clinical trial because it can improve the accuracy of detection and allow a better correlation between mutation, prognosis and drug response.

We have a panel of tests for detecting mutations in:

EGFR (including T790M)
K-RAS
B-RAF


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DNA Extraction

DxS offer a quality assured DNA extraction service to customers wishing to outsource this timely process.

DxS DNA extraction service process:

  1. Sample handling
    DxS extracts DNA from liquid blood, dried blood spots as well as several other sample types, including tissue and buccal swaps. Sample integrity and traceability are ensured using a fully secure Laboratory Information Management System (LIMS). All samples are identified and tracked using barcodes.
  2. DNA Extraction
    DxS has extensive validation data to support its DNA extraction service and offers guaranteed yield and purity based on sample type.
  3. Normalisation and Quantification
    DNA is supplied in tubes or deep-well plates. Daughter dilution plates can be made for direct use by the client. All samples can be normalised (set to a defined volume or concentration) and quantified, using our in-house validated protocols.
  4. Quality Control
    A range of quality control tests can be tailored and performed to suit client specific requirements.
  5. DNA Banking
    A secure storage facility is available at DxS if required. Samples can be stored at either -80°C or -20°C. Long term DNA archiving is often done using our SAFEspot cards.

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Project Management

Every client’s genotyping project will be assigned a dedicated Project Manager at DxS to ensure that the project runs to timescales and on budget. Upon agreeing the scope of the project, a study protocol will be written detailing every aspect of the process to ensure the requirements of the customer are fully met. The protocol includes:

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Sample type i.e. whole blood, plasma, frozen tumour tissue, serum, dried blood spots, buccal swaps etc

bullet Test panel
bullet Batch size and batch frequency
bullet Analysis turnaround time
bullet Sample delivery schedule
bullet Result format
bullet Final report format
bullet Deadlines and timescales

DxS can offer bespoke genotyping studies for a wide range of clinical trials, including international and multi-centre trials. We can work with studies that span only a week or as long as two years and will work with customers who have any number of samples from Phase I through to phase IV.
 

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Quality System

DxS is ISO9001:2000 certified for the provision of genetic analysis services to the healthcare industry, the services operate according to the principles of Good Laboratory Practice (GLP).

In March 2005 the FDA published a Pharmacogenomics Data Submissions Guidance to Industry, it showed that the FDA has enthusiasm for pharmacogenetic analysis and it specified the regulatory standards that apply.
DxS ensures that the pharmacogenetic data produced for client studies will meet the regulatory requirements for genomic data submission.


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